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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63700371_63700889_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63700371 - 63700889
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTCTTTTTAAAC
Flanking Amino Acid:
KAHEIAPEDKAIQTETLKIK
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.7
0.67
0.9
77.5
34.7
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
69.5
0.59
1.3
74.65
36.2

Associated Gene:

Gene:
PPID
Ensembl Gene ID:
ENSAPLG00000014725
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015378
63700131 - 63712705
12575