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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63701105_63703149_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63701105 - 63703149
Intron Length:
2045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTAAATTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTAAAT
Flanking Amino Acid:
WQGAIDSCSEALKIDPANTK
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.6
0.55
1
66.2
43.5
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
67.1
0.61
1.7
84.88
34.6

Associated Gene:

Gene:
PPID
Ensembl Gene ID:
ENSAPLG00000014725
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015378
63700131 - 63712705
12575