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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63703292_63705615_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63703292 - 63705615
Intron Length:
2324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TCTTTGTAAACC
Flanking Amino Acid:
MAAKKYSKSLRYVEASETVA
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
70
42.1
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
88.6
0.87
0.7
81.3
36.4
Minor 5ss
34.8
-1.7
3.4
48.3
47.3
Minor BPS
50.3
-0
2.3
69.02
43.1

Associated Gene:

Gene:
PPID
Ensembl Gene ID:
ENSAPLG00000014725
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015378
63700131 - 63712705
12575