About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63710941_63712620_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63710941 - 63712620
Intron Length:
1680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGGCC
5'SS Class:
major
3'SS Sequence:
TCTGTCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTTTTCTCATTC
Flanking Amino Acid:
FFDVDIGGERVGRIVFELFA
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
65.5
34.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.1
0.7
0.9
77.9
35.2
Minor 5ss
23.6
-3
3.5
32.2
42.8
Minor BPS
53.3
0.08
1.8
66.91
39

Associated Gene:

Gene:
PPID
Ensembl Gene ID:
ENSAPLG00000014725
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015378
63700131 - 63712705
12575