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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63742581_63745674_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63742581 - 63745674
Intron Length:
3094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TATTTCTTATAT
Flanking Amino Acid:
VRKIDEAVIQKMAEDAAVKA
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
82.4
29.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
78.2
0.64
1
72.9
41.4
Minor 5ss
41.2
-1
2.9
57.1
47.2
Minor BPS
65.4
0.56
1.7
82.24
38.7

Associated Gene:

Gene:
FNIP2
Ensembl Gene ID:
ENSAPLG00000015049
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015721
63735513 - 63767366
31854
ENSAPLT00000034998
63720374 - 63767366
46993
ENSAPLT00000034870
63721274 - 63764370
43097
ENSAPLT00000026909
63720374 - 63767366
46993
ENSAPLT00000018493
63730148 - 63766791
36644
ENSAPLT00000046555
63735513 - 63766791
31279