About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63747761_63747899_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63747761 - 63747899
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTAGAT
U12 Branch Point Sequence:
TTTCTCTAGATT
Flanking Amino Acid:
LGTCRSGSNLGVLQLCSSKL
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
66.6
0.41
1.1
62.9
43.3
Major PPT
83.2
0.75
0.8
77.1
37.1
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
59.5
0.38
1.7
79.75
36.6

Associated Gene:

Gene:
FNIP2
Ensembl Gene ID:
ENSAPLG00000015049
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034870
63721274 - 63764370
43097
ENSAPLT00000018493
63730148 - 63766791
36644
ENSAPLT00000015721
63735513 - 63767366
31854
ENSAPLT00000046555
63735513 - 63766791
31279
ENSAPLT00000034998
63720374 - 63767366
46993