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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63747761_63749091_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63747761 - 63749091
Intron Length:
1331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTGTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTCTATTGATC
Flanking Amino Acid:
LGTCRSGSNLAHSTPVDMPS
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
78.2
0.64
0.9
76.9
37.3
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
58.3
0.24
1.6
71.87
32.8

Associated Gene:

Gene:
FNIP2
Ensembl Gene ID:
ENSAPLG00000015049
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026909
63720374 - 63767366
46993