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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63749903_63753615_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63749903 - 63753615
Intron Length:
3713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
ACTGTCCTAACA
Flanking Amino Acid:
TSLENGIIPRWSTEEMFSMA
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
72
0.55
1
71.8
31.4
Major PPT
75.7
0.58
0.9
70
35.9
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
54.6
0.14
1.8
65.71
40.9

Associated Gene:

Gene:
FNIP2
Ensembl Gene ID:
ENSAPLG00000015049
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034870
63721274 - 63764370
43097
ENSAPLT00000026909
63720374 - 63767366
46993
ENSAPLT00000018493
63730148 - 63766791
36644
ENSAPLT00000046555
63735513 - 63766791
31279
ENSAPLT00000015721
63735513 - 63767366
31854
ENSAPLT00000034998
63720374 - 63767366
46993