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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63754475_63755221_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63754475 - 63755221
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTGAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TCTTCTTTGAGC
Flanking Amino Acid:
SRVMDALGEFRITIWNLYSV
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
80.2
30.7
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
75.5
0.57
1
73.3
35.8
Minor 5ss
34.1
-1.8
2.8
40.8
45.4
Minor BPS
65.3
0.46
1.6
73.02
38.9

Associated Gene:

Gene:
FNIP2
Ensembl Gene ID:
ENSAPLG00000015049
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026909
63720374 - 63767366
46993
ENSAPLT00000018493
63730148 - 63766791
36644
ENSAPLT00000046555
63735513 - 63766791
31279
ENSAPLT00000015721
63735513 - 63767366
31854
ENSAPLT00000034998
63720374 - 63767366
46993
ENSAPLT00000034870
63721274 - 63764370
43097