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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63755369_63755491_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
63755369 - 63755491
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTCTTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
ATGTTCTGACAC
Flanking Amino Acid:
TFLIEQINKNQFFAALLTAV
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
72.9
39.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
85.5
0.8
0.6
80.4
31.6
Minor 5ss
57
0.24
2.7
79.2
35.5
Minor BPS
47.4
-0.2
1.8
58.45
40.3

Associated Gene:

Gene:
FNIP2
Ensembl Gene ID:
ENSAPLG00000015049
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034870
63721274 - 63764370
43097
ENSAPLT00000026909
63720374 - 63767366
46993
ENSAPLT00000018493
63730148 - 63766791
36644
ENSAPLT00000046555
63735513 - 63766791
31279
ENSAPLT00000015721
63735513 - 63767366
31854
ENSAPLT00000034998
63720374 - 63767366
46993