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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63759991_63760676_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63759991 - 63760676
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGAG
5'SS Class:
major
3'SS Sequence:
CTTTGTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
AGAATCATACCT
Flanking Amino Acid:
EFVEVELPLPRSNTISSQCV
Intron Amino Acid Position:
980

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.3
39.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
84.2
0.77
0.8
81.4
34.9
Minor 5ss
27.9
-2.5
3.5
36.8
47.7
Minor BPS
45.8
-0.2
1.9
61.73
41.5

Associated Gene:

Gene:
FNIP2
Ensembl Gene ID:
ENSAPLG00000015049
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026909
63720374 - 63767366
46993
ENSAPLT00000018493
63730148 - 63766791
36644
ENSAPLT00000046555
63735513 - 63766791
31279
ENSAPLT00000015721
63735513 - 63767366
31854
ENSAPLT00000034998
63720374 - 63767366
46993
ENSAPLT00000034870
63721274 - 63764370
43097