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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63760834_63761972_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63760834 - 63761972
Intron Length:
1139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
GCATCTCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTCCATAACG
Flanking Amino Acid:
LLADLLHAMHHPVLDEPIAE
Intron Amino Acid Position:
1033

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
78.4
25.8
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
76
0.59
0.9
69.3
36.6
Minor 5ss
36.5
-1.5
2.9
44.6
43.6
Minor BPS
78.3
0.75
1.6
84.77
34.2

Associated Gene:

Gene:
FNIP2
Ensembl Gene ID:
ENSAPLG00000015049
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018493
63730148 - 63766791
36644
ENSAPLT00000046555
63735513 - 63766791
31279
ENSAPLT00000015721
63735513 - 63767366
31854
ENSAPLT00000034998
63720374 - 63767366
46993
ENSAPLT00000034870
63721274 - 63764370
43097
ENSAPLT00000026909
63720374 - 63767366
46993