About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63762174_63765572_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63762174 - 63765572
Intron Length:
3399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TCTGTATTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGGTCTGTATTT
Flanking Amino Acid:
LYKLNLPADFCIMHLEDRLQ
Intron Amino Acid Position:
1100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
70.9
39.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.9
0.74
0.9
76.4
36.7
Minor 5ss
38.7
-1.3
2.8
51.8
39.1
Minor BPS
47.4
-0.1
2.2
67.82
43.9

Associated Gene:

Gene:
FNIP2
Ensembl Gene ID:
ENSAPLG00000015049
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034998
63720374 - 63767366
46993
ENSAPLT00000026909
63720374 - 63767366
46993
ENSAPLT00000018493
63730148 - 63766791
36644
ENSAPLT00000015721
63735513 - 63767366
31854
ENSAPLT00000046555
63735513 - 63766791
31279