About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63773938_63792367_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
63773938 - 63792367
Intron Length:
18430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACCACT
5'SS Class:
major
3'SS Sequence:
ATGCTCACATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCAGCACTAATT
Flanking Amino Acid:
DQATHRYQSPWQPAPYILEQ
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.2
68
42.9
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
59.6
0.22
1
57.7
37.8
Minor 5ss
47.7
-0.2
2.6
64.6
40.8
Minor BPS
47.6
-0.1
2
66.6
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015551
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016198
63753475 - 63807724
54250