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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63792427_63800202_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63792427 - 63800202
Intron Length:
7776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTCTCTTTGACA
Flanking Amino Acid:
KNLQSGAQIKRGLIWQAAED
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
78.6
37.2
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
81.8
0.71
0.9
79.3
32.7
Minor 5ss
31.6
-2.1
3.1
38.7
46.6
Minor BPS
78.7
0.9
1.1
82.02
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015551
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016198
63753475 - 63807724
54250