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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63877341_63882147_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63877341 - 63882147
Intron Length:
4807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TCATAATTAAAA
Flanking Amino Acid:
ALSNLREHQLRLMCETVRYE
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
68.6
37.4
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
44.4
-0.6
2.8
59.5
45.2
Minor BPS
50.7
0.02
1.9
64.19
41.2

Associated Gene:

Gene:
RAPGEF2
Ensembl Gene ID:
ENSAPLG00000000967
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023917
63821989 - 64000016
178028
ENSAPLT00000047378
63821989 - 64001023
179035
ENSAPLT00000001208
63876782 - 64001023
124242
ENSAPLT00000046753
63821989 - 64001023
179035
ENSAPLT00000033725
63821989 - 64001023
179035
ENSAPLT00000027247
63821989 - 64000016
178028
ENSAPLT00000047982
63821989 - 64000016
178028