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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63916195_63918676_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63916195 - 63918676
Intron Length:
2482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
GCATCTATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAC
U12 Branch Point Sequence:
CTTTTGGGAAAT
Flanking Amino Acid:
IVLEPSEMIVVDYMDENEEY
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
82.6
29.6
Major BPS
58.2
0.2
1
49.5
35.1
Major PPT
68.7
0.42
0.9
62
38.5
Minor 5ss
37.2
-1.4
3
46.4
43
Minor BPS
40.5
-0.6
2.6
65.14
45.4

Associated Gene:

Gene:
RAPGEF2
Ensembl Gene ID:
ENSAPLG00000000967
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027247
63821989 - 64000016
178028
ENSAPLT00000047982
63821989 - 64000016
178028
ENSAPLT00000023917
63821989 - 64000016
178028
ENSAPLT00000047378
63821989 - 64001023
179035
ENSAPLT00000001208
63876782 - 64001023
124242
ENSAPLT00000046753
63821989 - 64001023
179035
ENSAPLT00000033725
63821989 - 64001023
179035