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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63918845_63957241_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63918845 - 63957241
Intron Length:
38397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCTGC
5'SS Class:
major
3'SS Sequence:
GCTCCACCTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTCTGCTCCACC
Flanking Amino Acid:
KPPLPRGYHTLPADFTKLHL
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
64.4
42.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
66.4
0.37
0.8
58.5
32
Minor 5ss
44.7
-0.6
2.9
59.8
45
Minor BPS
47.5
-0.2
2.4
66.26
45.6

Associated Gene:

Gene:
RAPGEF2
Ensembl Gene ID:
ENSAPLG00000000967
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023917
63821989 - 64000016
178028
ENSAPLT00000001208
63876782 - 64001023
124242
ENSAPLT00000027247
63821989 - 64000016
178028