About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63967609_63969428_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63967609 - 63969428
Intron Length:
1820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TGATTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TACCTTTTAATA
Flanking Amino Acid:
GTIVLNDGEEFVCIAQQDYC
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.2
78
38.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82
0.72
0.9
73.5
41.6
Minor 5ss
30.5
-2.2
2.5
34.7
40.9
Minor BPS
62.8
0.4
1.2
65.03
35.7

Associated Gene:

Gene:
RAPGEF2
Ensembl Gene ID:
ENSAPLG00000000967
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047378
63821989 - 64001023
179035