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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63968109_63969428_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63968109 - 63969428
Intron Length:
1320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGTGT
5'SS Class:
major
3'SS Sequence:
TGATTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TACCTTTTAATA
Flanking Amino Acid:
VMRTKVDDCQFVCIAQQDYC
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
63.7
43.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82
0.72
0.9
73.5
41.6
Minor 5ss
36.4
-1.5
3.7
55.4
48.8
Minor BPS
62.8
0.4
1.2
65.03
35.7

Associated Gene:

Gene:
RAPGEF2
Ensembl Gene ID:
ENSAPLG00000000967
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023917
63821989 - 64000016
178028
ENSAPLT00000047982
63821989 - 64000016
178028
ENSAPLT00000018312
63934213 - 64001023
66811
ENSAPLT00000046753
63821989 - 64001023
179035
ENSAPLT00000001208
63876782 - 64001023
124242
ENSAPLT00000033725
63821989 - 64001023
179035
ENSAPLT00000027247
63821989 - 64000016
178028