Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63969582_63969906_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

63969582 - 63969906

Intron Length:

325

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAAGCA

5'SS Class:

strong_major

3'SS Sequence:

CTTTTATATATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

ATTTTTTTAAGT

Flanking Amino Acid:

GTRKGHIVIKGTAERLTMHL

Intron Amino Acid Position:

395

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

0.9

71.1

32.5

Major BPS

87.3

0.93

0.8

36.5

Major PPT

78.2

0.63

0.9

73.8

34.9

Minor 5ss

30.1

-2.3

3.3

39.5

45.9

Minor BPS

71.1

0.74

1.5

85.39

35.1

Associated Gene:

Gene:

RAPGEF2

Ensembl Gene ID:

ENSAPLG00000000967

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018312

63934213 - 64001023

66811

ENSAPLT00000046753

63821989 - 64001023

179035

ENSAPLT00000001208

63876782 - 64001023

124242

ENSAPLT00000033725

63821989 - 64001023

179035

ENSAPLT00000027247

63821989 - 64000016

178028

ENSAPLT00000047982

63821989 - 64000016

178028

ENSAPLT00000023917

63821989 - 64000016

178028

ENSAPLT00000047378

63821989 - 64001023

179035