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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63970072_63973100_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63970072 - 63973100
Intron Length:
3029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAAAATC
5'SS Class:
major
3'SS Sequence:
GATTAATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TATTGATTAATT
Flanking Amino Acid:
WFNDPSLRDKVTRVVLLWVN
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.2
73.4
35.5
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
75.4
0.57
1
70.6
44.1
Minor 5ss
33.7
-1.9
3
44
43.3
Minor BPS
61.8
0.45
2
82.44
38.8

Associated Gene:

Gene:
RAPGEF2
Ensembl Gene ID:
ENSAPLG00000000967
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018312
63934213 - 64001023
66811
ENSAPLT00000046753
63821989 - 64001023
179035
ENSAPLT00000001208
63876782 - 64001023
124242
ENSAPLT00000033725
63821989 - 64001023
179035
ENSAPLT00000027247
63821989 - 64000016
178028
ENSAPLT00000047982
63821989 - 64000016
178028
ENSAPLT00000023917
63821989 - 64000016
178028
ENSAPLT00000047378
63821989 - 64001023
179035