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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63973705_63976539_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63973705 - 63976539
Intron Length:
2835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTGTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTTCTTTCCACT
Flanking Amino Acid:
LSITVKTNLFVFKELLTRLS
Intron Amino Acid Position:
590

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
83.6
0.76
0.8
80.1
31.9
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
47.4
-0.1
1.9
68.64
42.7

Associated Gene:

Gene:
RAPGEF2
Ensembl Gene ID:
ENSAPLG00000000967
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027247
63821989 - 64000016
178028
ENSAPLT00000047982
63821989 - 64000016
178028
ENSAPLT00000023917
63821989 - 64000016
178028
ENSAPLT00000047378
63821989 - 64001023
179035
ENSAPLT00000018312
63934213 - 64001023
66811
ENSAPLT00000046753
63821989 - 64001023
179035
ENSAPLT00000001208
63876782 - 64001023
124242
ENSAPLT00000033725
63821989 - 64001023
179035