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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63980223_63984636_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63980223 - 63984636
Intron Length:
4414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGATC
5'SS Class:
strong_major
3'SS Sequence:
AATTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
CATTACTGAATT
Flanking Amino Acid:
HRILDFNTTPDLPDQVLRVF
Intron Amino Acid Position:
725

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
82.1
31
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
81.2
0.7
0.9
77.7
40.7
Minor 5ss
31.4
-2.1
3.2
42.1
45
Minor BPS
60.2
0.4
1.7
75.29
41.2

Associated Gene:

Gene:
RAPGEF2
Ensembl Gene ID:
ENSAPLG00000000967
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018312
63934213 - 64001023
66811
ENSAPLT00000046753
63821989 - 64001023
179035
ENSAPLT00000001208
63876782 - 64001023
124242
ENSAPLT00000033725
63821989 - 64001023
179035
ENSAPLT00000027247
63821989 - 64000016
178028
ENSAPLT00000047982
63821989 - 64000016
178028
ENSAPLT00000023917
63821989 - 64000016
178028
ENSAPLT00000047378
63821989 - 64001023
179035