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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63985528_63987154_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63985528 - 63987154
Intron Length:
1627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTGCAC
5'SS Class:
major
3'SS Sequence:
TTGTTGTTTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TCCTCTTGAACT
Flanking Amino Acid:
KNFNSMFAIISGLNLAPVAR
Intron Amino Acid Position:
933

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
58.5
40.4
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
73.3
0.52
1.1
71.5
43.2
Minor 5ss
37.2
-1.4
3.3
50.1
46.5
Minor BPS
69.8
0.7
1.4
80.32
41.9

Associated Gene:

Gene:
RAPGEF2
Ensembl Gene ID:
ENSAPLG00000000967
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023917
63821989 - 64000016
178028
ENSAPLT00000047982
63821989 - 64000016
178028
ENSAPLT00000018312
63934213 - 64001023
66811
ENSAPLT00000047378
63821989 - 64001023
179035
ENSAPLT00000001208
63876782 - 64001023
124242
ENSAPLT00000046753
63821989 - 64001023
179035
ENSAPLT00000027247
63821989 - 64000016
178028