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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63987581_63988359_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63987581 - 63988359
Intron Length:
779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCACTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
CATGCTTTACTC
Flanking Amino Acid:
NMDPALMFRTRKKKWRSLGS
Intron Amino Acid Position:
924

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
79.8
0.67
0.8
73.3
30.4
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
50.1
-0
1.7
58.37
41.6

Associated Gene:

Gene:
RAPGEF2
Ensembl Gene ID:
ENSAPLG00000000967
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027247
63821989 - 64000016
178028
ENSAPLT00000047982
63821989 - 64000016
178028
ENSAPLT00000018312
63934213 - 64001023
66811
ENSAPLT00000047378
63821989 - 64001023
179035
ENSAPLT00000046753
63821989 - 64001023
179035
ENSAPLT00000033725
63821989 - 64001023
179035