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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63988384_63989423_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63988384 - 63989423
Intron Length:
1040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTACTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTCAT
U12 Branch Point Sequence:
CATTCCTTTACT
Flanking Amino Acid:
RTRKKKWRSLGSLSQGSTNA
Intron Amino Acid Position:
932

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
68.2
0.45
1.1
69.4
37.7
Major PPT
81.6
0.71
0.8
73.7
35.6
Minor 5ss
34
-1.8
3.3
40.9
45.4
Minor BPS
74.2
0.84
1.6
85.25
40.9

Associated Gene:

Gene:
RAPGEF2
Ensembl Gene ID:
ENSAPLG00000000967
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027247
63821989 - 64000016
178028
ENSAPLT00000047982
63821989 - 64000016
178028
ENSAPLT00000018312
63934213 - 64001023
66811
ENSAPLT00000047378
63821989 - 64001023
179035
ENSAPLT00000046753
63821989 - 64001023
179035
ENSAPLT00000033725
63821989 - 64001023
179035