Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63992244_63994630_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

63992244 - 63994630

Intron Length:

2387

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACTGGGC

5'SS Class:

major

3'SS Sequence:

GTTCCCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAG

U12 Branch Point Sequence:

GTCTGATTAACG

Flanking Amino Acid:

PTSPQSSPRKGYTLAPSGTV

Intron Amino Acid Position:

1233

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.42

1.1

56.9

42.1

Major BPS

70.6

0.51

1.5

77.9

34.9

Major PPT

0.74

0.8

76.8

31.7

Minor 5ss

28.6

-2.5

3.6

41.7

Minor BPS

51.2

-0.1

2.1

61.23

46.2

Associated Gene:

Gene:

RAPGEF2

Ensembl Gene ID:

ENSAPLG00000000967

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027247

63821989 - 64000016

178028

ENSAPLT00000047982

63821989 - 64000016

178028

ENSAPLT00000023917

63821989 - 64000016

178028

ENSAPLT00000047378

63821989 - 64001023

179035

ENSAPLT00000018312

63934213 - 64001023

66811

ENSAPLT00000046753

63821989 - 64001023

179035

ENSAPLT00000001208

63876782 - 64001023

124242

ENSAPLT00000033725

63821989 - 64001023

179035