About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63999752_64000997_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63999752 - 64000997
Intron Length:
1246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTGTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
TTTCCCCTATCC
Flanking Amino Acid:
QSQGFSAEEDEDEQVSAV*
Intron Amino Acid Position:
1597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
82.9
29.8
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
80
0.68
0.9
73.4
41.3
Minor 5ss
45.6
-0.5
3
63.7
43.1
Minor BPS
59.2
0.27
2
77.14
38.6

Associated Gene:

Gene:
RAPGEF2
Ensembl Gene ID:
ENSAPLG00000000967
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046753
63821989 - 64001023
179035
ENSAPLT00000033725
63821989 - 64001023
179035
ENSAPLT00000018312
63934213 - 64001023
66811
ENSAPLT00000001208
63876782 - 64001023
124242
ENSAPLT00000047378
63821989 - 64001023
179035