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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_64083488_64084307_F

Intron Information:

Intron Rank:
147882
Intron Class:
major
Intron Phase:
Intron Coordinates:
64083488 - 64084307
Intron Length:
820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTGAT
U12 Branch Point Sequence:
TTCTATTTAGTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
77.5
32.9
Major BPS
73.5
0.58
1.2
63.4
44.3
Major PPT
82.2
0.72
0.8
76.8
31.8
Minor 5ss
29.1
-2.4
2.8
34.7
41.7
Minor BPS
51
-0.1
1.8
59.75
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029614
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033223
64059707 - 64084718
25012