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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_64083488_64108833_F

Intron Information:

Intron Rank:
147880
Intron Class:
major
Intron Phase:
Intron Coordinates:
64083488 - 64108833
Intron Length:
25346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTCCTTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
77.5
32.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
81.8
0.72
0.8
76.1
32.6
Minor 5ss
29.1
-2.4
2.8
34.7
41.7
Minor BPS
71
0.66
1.5
81.34
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029614
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030448
64083224 - 64108866
25643