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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_64188917_64204215_F

Intron Information:

Intron Rank:
129164
Intron Class:
major
Intron Phase:
Intron Coordinates:
64188917 - 64204215
Intron Length:
15299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCCAGA
5'SS Class:
major
3'SS Sequence:
AATTGTTTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTATATTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.38
1.3
60
46.4
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
75.3
0.57
0.9
66.6
44.2
Minor 5ss
43.2
-0.7
3
58.2
45.9
Minor BPS
59.5
0.38
1.7
78.17
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019482
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022451
64188775 - 64206618
17844