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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_64230620_64235620_F

Intron Information:

Intron Rank:
124655
Intron Class:
major
Intron Phase:
Intron Coordinates:
64230620 - 64235620
Intron Length:
5001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCAAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TATTTCCAAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
67
0.38
1
65.5
39.5
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
51
0.01
2
67.65
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017189
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024357
64230400 - 64238892
8493