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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_64242075_64244430_F

Intron Information:

Intron Rank:
124660
Intron Class:
major
Intron Phase:
Intron Coordinates:
64242075 - 64244430
Intron Length:
2356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGGCCCTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATTAATTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
72.7
0.51
0.9
65.1
36.3
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
60.2
0.4
1.6
77.79
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017189
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044886
64238650 - 64244882
6233