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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_64370637_64377507_R

Intron Information:

Intron Rank:
132724
Intron Class:
major
Intron Phase:
Intron Coordinates:
64370637 - 64377507
Intron Length:
6871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTGCTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
75.7
36.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
85.8
0.81
0.8
80.2
31.5
Minor 5ss
39.9
-1.1
3.3
47.1
48.3
Minor BPS
63
0.49
1.8
82.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018640
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048371
64370459 - 64402635
32177
ENSAPLT00000044256
64370459 - 64422991
52533
ENSAPLT00000023546
64370459 - 64408446
37988
ENSAPLT00000020922
64370459 - 64430708
60250