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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_64401226_64422952_R

Intron Information:

Intron Rank:
132735
Intron Class:
major
Intron Phase:
Intron Coordinates:
64401226 - 64422952
Intron Length:
21727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCATACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTCCATACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
71.8
0.49
0.9
70.9
33.9
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
66.4
0.59
1.9
88.85
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018640
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044256
64370459 - 64422991
52533