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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_64409267_64430487_R

Intron Information:

Intron Rank:
132737
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
64409267 - 64430487
Intron Length:
21221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACTGTTT
5'SS Class:
weak_major
3'SS Sequence:
TGTTTTTGTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATTAG
U12 Branch Point Sequence:
AGGTAGGTAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.1
66.2
40
Major BPS
49.4
-0
1.6
49.4
44.5
Major PPT
81.1
0.7
0.9
81.2
36.5
Minor 5ss
43.4
-0.7
3.6
64
42
Minor BPS
36.7
-0.9
2.6
55.95
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018640
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046660
64407316 - 64430708
23393