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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_64511033_64513351_R

Intron Information:

Intron Rank:
137489
Intron Class:
major
Intron Phase:
Intron Coordinates:
64511033 - 64513351
Intron Length:
2319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCACTTCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTTCACTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
78.6
0.71
1
78.6
31
Major PPT
77.7
0.62
0.8
72.7
31.7
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
56.7
0.2
1.9
73.87
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021443
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032475
64510321 - 64541896
31576