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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_64543686_64552282_F

Intron Information:

Intron Rank:
137578
Intron Class:
major
Intron Phase:
Intron Coordinates:
64543686 - 64552282
Intron Length:
8597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCTG
5'SS Class:
strong_major
3'SS Sequence:
CCATTACTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATCAT
U12 Branch Point Sequence:
TCTCCCATTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.6
41.7
Major BPS
63.3
0.33
1.2
65.6
39.7
Major PPT
76.4
0.59
0.9
69.7
35.4
Minor 5ss
37.9
-1.4
3
50.1
46.1
Minor BPS
57.4
0.31
2
79.12
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024088
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023007
64542621 - 64552941
10321