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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_64593595_64595123_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64593595 - 64595123
Intron Length:
1529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTACTTTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTGTTTGTAATA
Flanking Amino Acid:
DMEKNSPTLQVITQASGSVS
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
83.2
30.8
Major BPS
80
0.75
1
78.6
31
Major PPT
77.2
0.61
0.9
74.1
35.4
Minor 5ss
32.5
-2
3.1
41.3
45.3
Minor BPS
55.7
0.17
2
69.78
37.7

Associated Gene:

Gene:
FSTL5
Ensembl Gene ID:
ENSAPLG00000002939
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018210
64571280 - 64838386
267107
ENSAPLT00000002975
64571280 - 64889805
318526
ENSAPLT00000040593
64571280 - 64927863
356584
ENSAPLT00000034772
64570280 - 64762262
191983
ENSAPLT00000025506
64571280 - 64857493
286214