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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_64595232_64599953_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64595232 - 64599953
Intron Length:
4722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCTA
5'SS Class:
major
3'SS Sequence:
TATTATGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CTTCTCTTATTA
Flanking Amino Acid:
VDVQSQKVVQAVSTDPVPVK
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.5
38.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
76.7
0.6
1
70.1
40.7
Minor 5ss
44
-0.7
2.8
59
45.4
Minor BPS
58.6
0.27
1.6
67.92
39.1

Associated Gene:

Gene:
FSTL5
Ensembl Gene ID:
ENSAPLG00000002939
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034772
64570280 - 64762262
191983
ENSAPLT00000025506
64571280 - 64857493
286214
ENSAPLT00000018210
64571280 - 64838386
267107
ENSAPLT00000002975
64571280 - 64889805
318526
ENSAPLT00000040593
64571280 - 64927863
356584