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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_64600104_64608123_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64600104 - 64608123
Intron Length:
8020

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGAAATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTCTTTTGAAAT
Flanking Amino Acid:
KPSEKLLGFQDEVCPKADGD
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
90.9
28.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
69.2
0.43
1
60.9
44
Minor 5ss
35.8
-1.6
4.1
57.8
46.8
Minor BPS
60.9
0.42
1.5
77.37
39.2

Associated Gene:

Gene:
FSTL5
Ensembl Gene ID:
ENSAPLG00000002939
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002975
64571280 - 64889805
318526
ENSAPLT00000040593
64571280 - 64927863
356584
ENSAPLT00000034772
64570280 - 64762262
191983
ENSAPLT00000025506
64571280 - 64857493
286214
ENSAPLT00000018210
64571280 - 64838386
267107