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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_64608243_64626409_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64608243 - 64626409
Intron Length:
18167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTTTCCCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TATTTTTCAATG
Flanking Amino Acid:
LFVEDSARKTRLGIGNMFYV
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.3
82.1
37.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
78.3
0.64
0.9
83.9
24.8
Minor 5ss
43.5
-0.7
2.9
65.1
39.1
Minor BPS
59.5
0.16
1.5
64.08
38.4

Associated Gene:

Gene:
FSTL5
Ensembl Gene ID:
ENSAPLG00000002939
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025506
64571280 - 64857493
286214
ENSAPLT00000018210
64571280 - 64838386
267107
ENSAPLT00000002975
64571280 - 64889805
318526