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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_64626545_64628428_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64626545 - 64628428
Intron Length:
1884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGGG
5'SS Class:
major
3'SS Sequence:
CCTCTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
GTATGTTGAATT
Flanking Amino Acid:
PKLSKQLTLQANGSEVHISN
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
61.1
43.7
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
86.2
0.81
0.7
83.9
24.2
Minor 5ss
28
-2.5
3.5
37.8
47.1
Minor BPS
51.3
0.12
1.9
70.31
40.9

Associated Gene:

Gene:
FSTL5
Ensembl Gene ID:
ENSAPLG00000002939
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002975
64571280 - 64889805
318526
ENSAPLT00000040593
64571280 - 64927863
356584
ENSAPLT00000034772
64570280 - 64762262
191983
ENSAPLT00000025506
64571280 - 64857493
286214
ENSAPLT00000018210
64571280 - 64838386
267107