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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_64628591_64636415_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64628591 - 64636415
Intron Length:
7825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TAAATCATAACT
Flanking Amino Acid:
LFQTHILQVNVPPVIRVYPE
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
84.4
0.77
0.8
81.6
30.5
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
59.8
0.39
1.7
76.02
39.7

Associated Gene:

Gene:
FSTL5
Ensembl Gene ID:
ENSAPLG00000002939
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025506
64571280 - 64857493
286214
ENSAPLT00000018210
64571280 - 64838386
267107
ENSAPLT00000002975
64571280 - 64889805
318526
ENSAPLT00000040593
64571280 - 64927863
356584
ENSAPLT00000034772
64570280 - 64762262
191983