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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_64654655_64682627_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64654655 - 64682627
Intron Length:
27973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
ATATCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TTAACCTTGAAA
Flanking Amino Acid:
LGLEEFYRAFQVIQLSLPED
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.3
73.3
37.4
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
82.9
0.74
0.8
77.5
35.9
Minor 5ss
37.5
-1.4
2.6
44.5
37.1
Minor BPS
65.9
0.49
1.5
73.57
37.4

Associated Gene:

Gene:
FSTL5
Ensembl Gene ID:
ENSAPLG00000002939
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002975
64571280 - 64889805
318526
ENSAPLT00000040593
64571280 - 64927863
356584
ENSAPLT00000034772
64570280 - 64762262
191983
ENSAPLT00000025506
64571280 - 64857493
286214
ENSAPLT00000018210
64571280 - 64838386
267107