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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_64761983_64803750_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64761983 - 64803750
Intron Length:
41768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TCTTCTATTACA
Flanking Amino Acid:
EKNQEGSRSKGYMGQDGHLG
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.1
1.13
0.6
93.5
20.3
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
90.2
0.9
0.7
88.4
28.7
Minor 5ss
38.4
-1.3
2.8
52.3
44.3
Minor BPS
56.5
0.2
1.9
72.06
39.9

Associated Gene:

Gene:
FSTL5
Ensembl Gene ID:
ENSAPLG00000002939
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002975
64571280 - 64889805
318526
ENSAPLT00000040593
64571280 - 64927863
356584
ENSAPLT00000025506
64571280 - 64857493
286214
ENSAPLT00000018210
64571280 - 64838386
267107