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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_64828360_64889773_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
64828360 - 64889773
Intron Length:
61414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGCTT
5'SS Class:
major
3'SS Sequence:
TTTATTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTCACTGAACT
Flanking Amino Acid:
MQQVLPLHPRWNRPVKMFMW
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
68
42.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.6
0.73
1
80
37.5
Minor 5ss
36.9
-1.5
3.5
53.5
44.7
Minor BPS
62.8
0.48
1.7
81.08
39.4

Associated Gene:

Gene:
FSTL5
Ensembl Gene ID:
ENSAPLG00000002939
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002975
64571280 - 64889805
318526