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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_64986791_65004829_R

Intron Information:

Intron Rank:
147926
Intron Class:
major
Intron Phase:
Intron Coordinates:
64986791 - 65004829
Intron Length:
18039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCAAGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
68.6
37.4
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
70.3
0.46
1
68.1
37.8
Minor 5ss
44.4
-0.6
2.8
59.5
45.2
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026874
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046505
64981502 - 65004842
23341