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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_65040272_65048742_R

Intron Information:

Intron Rank:
138596
Intron Class:
major
Intron Phase:
Intron Coordinates:
65040272 - 65048742
Intron Length:
8471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCAAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTCAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82
26.2
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
82.8
0.74
0.9
85.8
26
Minor 5ss
45.6
-0.5
2.5
57.6
47.1
Minor BPS
59.2
0.15
1.7
68.37
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022049
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017283
65040052 - 65050166
10115